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Abstract Islands of fertility, patches of locally enhanced soil conditions, play a key role in increasing productivity in dryland regions. The fertile island effect (FIE) influences a range of variables including nutrient availability, soil moisture and microbial activity. While most examinations of the FIE focus on islands created by perennial plants at local scales, the effect may vary across spatial scales and under cover types including shrubs, grasses and biological soil crusts (biocrusts). This study explored differences in the FIE between soil depths across landforms and patch types for biogeochemical factors (nutrient availability) and biotic properties (microbial community structure, extracellular enzymatic activity). The FIE differed across landforms and soil depths, suggesting that soil geomorphology may play a major role in predicting soil fertility. Additionally, the FIE of enzymatic activity and available nutrients varied by patch type consistently across landforms, suggesting patch-scale processes influencing nutrient availability and acquisition are independent of landscape-scale differences. We show that biocrusts can have an FIE similar to that of shrubs and grasses, an underexplored control of variability and productivity in drylands. These findings necessitate further work to improve our understanding of how ecosystem processes vary across scales to influence patterns of productivity and soil fertility.